Our Research
The Aptamer Stream uses oligonucleotide chemistry, in vitro selection methodology, and biochemistry to develop novel therapeutics, diagnostics, and molecular sensors. The tool of choice for the development of these applications is an aptamer; an oligonucleotide binding species that is sometimes referred to as a molecular sticker.
We utilize methodology to identify aptamers against a variety of targets and develop their downstream applications. For example, aptamers targeting the precursors of disease states could offer inhibitory functions, thus serving as therapeutics to alleviate disease. Still, other aptamers against disease biomarkers could be used in the development of disease diagnostics. Some aptamers may even serve as gene regulators (such as synthetic riboswitches) or for targeted drug delivery (such as nanoparticle adjuncts).
Our Strategy
We aim to develop a fundamental awareness and early experience in scientific research, specifically in the field of aptamer development, that is, oligonucleotide affinity reagent development. This involves an introduction to the terminology, technical concepts, and principles of our research.
Aptamer Research Techniques
- enzyme catalyzed reactions (PCR)
- reverse transcription
- transcription
- gel electrophoresis
- oligonucleotide purification
- micropipetting
We also focus on how to:
- identify a creative, focused, and manageable question or topic related to our research goals
- design a methodology for answering a research question, perusing the project, or small-scale “troubleshooting” tests
- demonstrate understanding of the research implications and its translation to practical applications
- develop teamwork, scientific communication, data analysis, and resilience skills
Our Impact
Aptamers are pieces of RNA or DNA that bind a variety of biological targets and are used by researchers around the world as therapeutics, sensors, drug delivery vehicles, and affinity reagents in diagnostic assays. We seek to contribute to this growing field of aptamer research and aptamer tools by identifying aptamers, understanding the underlying mechanisms and parameters of aptamer selections, investigating aptamer specificity, and examining publication information to improve reproducibility.
Our Team
Gwendolyn Stovall
- Associate Professor of Practice
- Molecular Biosciences
- College of Natural Sciences
- Freshman Research Initiative
Leads the FRI Aptamer Stream, where students use biochemistry and molecular biology to develop tools made of RNA and DNA.
Andrew Ellington
- Professor
- Nancy Lee and Perry R. Bass Regents Chair in Molecular Biology
- Wilson M. and Kathryn Fraser Research Professorship in Biochemistry
- Molecular Biosciences
- Interdisciplinary Life Sciences Graduate Programs
Resources
Course Credit
Research Outcomes
- Miller AA, Rao AS, Nelakanti SR, Kujalowicz C, Shi T, Rodriguez T, Ellington AD, Stovall GM. Systematic Review of Aptamer Sequence Reporting in the Literature Reveals Widespread Unexplained Sequence Alterations. Anal Chem. 2022. (AA Miller provided cover artwork for issue, Paper was highlighted in the July 29, 2022 International Society on Aptamers newsletter.)
- Rao A, Assadourian J, Miller A, Nnadi N, Stovall GM. Aptamers. In: Offermanns S., Rosenthal W. (eds) Encyclopedia of Molecular Pharmacology. Springer, Berlin, Heidelberg, 2020 & 2021.
- Stovall GM, Huynh V, Engelman S, Ellington AD. Aptamers in Education: Undergraduates Make Aptamers and Acquire 21st Century Skills Along the Way. Sensors 2019, 19 (15) 3270.